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#!/usr/bin/env -S gawk -f

# Usage: sxCumulateToMapCutAdaptSplite.awk <query|#|id
# Accumulate the counts of adjacent duplicated queries
# Input: query|#|id
# Output: query|#|id

BEGIN{
    FS = "\t"
    OFS = "\t"
}
{
    if ($1 != query)
    {
        if (NR > 1)
            print query, count, refId
        query = $1
        count = $2
        refId = $3
    }
    else
        count += $2
}
END{
    print query, count, refId
}